Challenges and Considerations in an ELN Evaluation and Implementation - Part 1
Written by Patrick Furer
An Electronic Laboratory Notebook (ELN) implementation requires careful planning across multiple dimensions including strategic alignment, technical integration, and human factors. Success depends on thorough requirement analysis, appropriate team composition, effective change management (technical & organizational), and a well-structured implementation approach. Organizations must balance standardization with user experience while ensuring data integrity throughout the migration process.
Implementing or migrating an ELN is a complex undertaking that demands significant resources and expertise across multiple disciplines. Therefore, it is advisable to consider whether engaging the support of ELN experts may be beneficial.

Strategic Planning and Preliminary Considerations
Organizational Goals and Requirements
Understanding your organization's specific reasons and readiness for implementing an ELN (or migrating to a new ELN) is crucial to selecting the right solution and a successful implementation. It is important to align the underlying expectations and resulting approach with the organization's goals and philosophy before starting the actual requirement analysis. Different priorities and expected benefits will lead to different system requirements and implementation approaches. Indeed, there is no “ready-to-be-used” and ‘one-fits-all’ solution so the organization has to be prepared for change.
Resource Planning
ELN implementation requires significant resources, both during selection and implementation phases. Underestimating these requirements is a common pitfall. Among others, it is recommended to consider the following aspects:
- Recognize that the evaluation and implementation of an ELN will consume substantial internal resources beyond just the procurement cost
- Consider the availability of key staff members who will need to participate in the process
- Create a realistic implementation timeline with clear milestones and sufficient buffer periods for unexpected delays
- Include specific checkpoints for regulatory compliance validation, where applicable
- Ensure management buy-in early in the process by demonstrating clear business value and addressing stakeholder concerns
- Consider data cleanup requirements as part of pre-implementation planning to ensure smooth migration and data integrity
Preparation for Change
Effective change management addresses both technical and human aspects of an ELN implementation. User acceptance and resistance to change often represent the greatest risks in ELN implementation and migration projects. It is important to be aware of those challenges from the very beginning to take the right measures, which include:
- Transparent communication throughout the entire process
- Involvement of key stakeholders in decision-making to increase buy-in
- Understanding and addressing employees' fears, wishes, concerns, and motivations
- Awareness of potential resistance to change and development of strategies to deal with it
- Gradual implementation of changes and continuous collection of feedback
Organizational change management is important in all phases but can be particularly complex and challenging during implementation when many stakeholders with different requirements, expectations and levels of knowledge need to be involved.
Team Composition
The composition of your ELN selection and implementation team greatly impacts project success. A diverse, cross-functional team ensures that all perspectives are considered. Therefore, it is important to:
- Assemble an interdisciplinary team for evaluation and implementation that covers all relevant functional areas
- Ensure a good mix of decision-makers and staff who work closely with laboratory processes
- Conduct a thorough stakeholder analysis and implement effective stakeholder management strategies
- Involve stakeholders at different levels throughout the organization in the process
- Assign clear roles and responsibilities for all aspects of the transition

Requirement Analysis
Workflow Analysis
Understanding your laboratory workflows is essential for selecting an ELN. Therefore, keep in mind to:
- Understand the diversity of existing workflows and the associated requirements for a new system
- Identify possibilities to optimize workflows and data flows
- Determine which workflows the new system should cover, and which may remain outside its scope
- Identify key elements of different datasets (e.g. typical experiments, data types generated, etc.)
- Focus on capabilities rather than trying to map every single process and data point
- Run workflow assessments to identify areas that may be hindering productivity, efficiency, quality, and safety
- If you have the opportunity (e.g. presentations from vendors), let yourself be inspired by functionalities that you did not yet know about. But make sure that you don't get side-tracked.
Interfaces and Integration
ELNs rarely exist in isolation. They must integrate with your existing IT landscape and other laboratory systems. In light of this, it is suggested to:
- Consider which functionalities will be central to the implementation and which should remain covered by existing systems. Please bear in mind that modern ELNs offer a wide range of functionalities, but it must be decided on a case-by-case basis whether including all these in the ELN is the best choice.
- Find a system that integrates well with your existing IT infrastructure
- Identify external systems and instruments the ELN needs to exchange data with (e.g. CDS, ERP, LIMS)
- Evaluate API capabilities for connecting to instruments and other software systems
Data Analysis
The nature and volume of data to be managed by your ELN impacts system requirements and migration strategies. As a result, it is crucial to:
- Understand the types and volumes of data that will need to be managed (raw data, reports, etc.)
- Determine what metadata will need to be captured to ensure findability and reusability of data.
- Determine which metadata might be used for data segregation, considering that requirements and organizational structures may evolve over time, such as through mergers, acquisitions, spin-offs, or departmental reorganizations.
- Become aware of the potential value of legacy data (today and in future) and define requirements for accessibility, traceability, role in knowledge management, etc.
- Identify current limitations and pain points in dealing with legacy data or legacy systems
Constraints and Limitations
Every organization has constraints that must be considered when selecting and implementing an ELN. The following aspects are recommended to be considered:
- Identify aspects that are difficult to change (existing customer contracts, unchangeable SOPs, legal requirements, data sovereignty policies)
- Consider data protection and security requirements, including compliance with regulations like GDPR and HIPAA
- Assess regulatory requirements and compliance aspects relevant to your industry
- Evaluate the limitations of potential ELN systems regarding chemical structure features or specialized scientific data
- Check your company’s attitude towards SaaS
Selection Criteria
Developing clear selection criteria helps focus the evaluation process on solutions that truly meet your needs. A comprehensive evaluation should incorporate various organizational perspectives, including the following:
- Business Perspective: Ensure alignment with strategic goals, user requirements, and scalability needs for future growth
- Technical (IT) Perspective: Assess integration capabilities, data management, system performance, and deployment options
- Compliance Perspective: Verify regulatory compliance (FDA 21 CFR Part 11, GLP, GMP), data security, and audit trail functionality
- Strategic Perspective: Evaluate vendor stability, innovation roadmap, and long-term partnership potential
- Commercial Perspective: Calculate total cost of ownership, licensing models, and return on investment
For instance, it is prudent to consider the following aspects:
- Compile top-level selection criteria that reflect the specific needs of your institution and laboratories
- Draft meaningful scenarios and check their feasibility in customized product demos provided by the vendors
- Evaluate vendor stability and reliability, especially for long-term partnerships
- Keep exit strategies in mind (assess the difficulty of potential future migration to another system)
- Compare potential solutions systematically against your criteria to narrow down your options effectively